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OJBTM
Online Journal of Bioinformatics ©
Volume 17(1):69-79, 2016.
Carragheen (Chondrus crispus) seaweed molecular marker database (CaMM-Db).
Jyotika Bhati, Tanmaya Kumar Sahu and Pankaj
Kumar Pandey
Centre for Agricultural
Bioinformatics, Indian Agricultural Statistics Research Institute, Library
Avenue, PUSA, New Delhi-110012, INDIA.
ABSTRACT
Bhati J, Sahu
TK, Pande PK., Carragheen (Chondrus crispus) seaweed
molecular marker database (CaMM-Db), Onl J Bioinform., 17(1):69-79, 2016.. Authors describe a molecular marker database
(CaMM-DB) for Chondrus crispus (carragheen) derived
from microsatellites and Single Nucleotide Polymorphisms (SNP). Carragheen is obtained from red seaweeds Gracilaria and Hypnea spp and genome sequences are available. Microsatellites and
SNPs molecular markers are identified from carragheen
genomic sequences with ESTs, complete genes and contig
sequences of carragheen from NCBI. CaMM-Db provides information on the type of SSR repeats,
simple and compound microsatellites, along with the characteristic of repeats
like size, region, patterns and type motifs to generate primers for wet lab
experimentation.
Keywords: Databases, Red algae, seaweed, SNPs, ESTs
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