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OJB©
Online Journal of Bioinformatics©
Volume
6 (1) : 99-105, 2005
Automated long oligo design
on consensus regions of similar genomes
Schretter C, Milinkovitch
MC
Unit of Evolutionary Genetics (UEG),
ABSTRACT
Schretter C, Milinkovitch
MC, Automated Long Oligo Design on Consensus Regions
of Similar Genomes, Online J Bioinformatics 6 (1) 99 -105, 2005.
A method to generate and design a
minimal set of long oligos for micro-arrays
applications was implemented. The tool is useful for evaluating gene expression
in phylogenetically related species with the same
micro-array. PYTHON, the BIOPYTHON library, CLUSTALW and the new OLIGOFAKTORY
design application that allow communications through XML messages were used and
source code is available.
Keywords: bio-python, source-code,
XML, micro-array design.