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OJBTM
Online Journal of
Bioinformatics ©
Volume 15 (2): 168-177, 2014.
Molecular
dynamic differences between isoform specific and class I PI3K inhibitors
Awantika Shrivastava,
K Durga Prasad1 and Archana
Giri2
Natco Research Centre, B-13, Industrial estate, Sanath Nagar, Hyderabad, Department of Biotechnology, JNTU,
Kukatpally, Hyderabad, India
Shrivastava A,
Prasad KD, Giri A., Molecular dynamic
differences between isoform specific and class I PI3K inhibitors, Onl J Bioinform., 15 (2): 168-177,
2014. Class I Pan PI3K inhibitors are
toxic but isoform specific inhibitors of the same compound may not be. Differences between isoform
specific inhibitor GS-1101 over Class I PI3K GDC-0941, WORTMANNIN & LY294002.
GS-1101(IDEALISISB) were docked in the binding site of 4 different isoforms
3DBS (p110 Gamma), 2Y3A (pI3k BETA), 2WXP (PI3K DELTA) & 4A55 (P110 ALPHA)
and compared with docking of Class I Pan PI3K GDC -0941 vs. isoform specific inhibitor. The
bound conformation of the isoform specific inhibitor was predicted by molecular
dynamics.
Keywords- Molecular docking studies, sequence Analysis, PI3K, ligandfit.